HOMD Taxa Preferred Body Sites
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| HMT-ID | Genus Species | Naming Status | Cultivation Status | Primary Body Site | Other Body Sites | Notes |
|---|---|---|---|---|---|---|
| HMT-389 | Abiotrophia defectiva | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-427 | Abiotrophia sp. HMT-427 | Unnamed | Cultivated | Oral (Abundance: Medium) | ||
| HMT-345 | Absconditicoccaceae [G1] bacterium HMT-345 | Phylotype | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-874 | Absconditicoccaceae [G1] bacterium HMT-874 | Phylotype | Uncultivated | Oral (Abundance: High) | ||
| HMT-875 | Absconditicoccaceae [G1] bacterium HMT-875 | Phylotype | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-990 | Absconditicoccaceae [G1] bacterium HMT-990 (DROPPED) | Dropped | Uncultivated | Unassigned | ||
| HMT-991 | Absconditicoccaceae [G2] bacterium HMT-991 | Phylotype | Uncultivated | Taxonomic Reference (Abundance: Scarce) | ||
| HMT-343 | Achromobacter xylosoxidans | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | Opportunistic Pathogen (Abundance: No data) | |
| HMT-209 | Acidovorax ebreus | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-216 | Acidovorax temperans | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-554 | Acinetobacter baumannii | Named | Cultivated | Opportunistic Pathogen (Abundance: Scarce) | ||
| HMT-297 | Acinetobacter johnsonii | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-282 | Acinetobacter junii | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | Opportunistic Pathogen (Abundance: Scarce) | |
| HMT-005 | Acinetobacter lwoffii | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | Opportunistic Pathogen (Abundance: Scarce) | |
| HMT-010 | Acinetobacter radioresistens | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-408 | Acinetobacter sp. HMT-408 | Phylotype | Uncultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-888 | Actinomyces dentalis | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-618 | Actinomyces gerencseriae | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-866 | Actinomyces graevenitzii | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-645 | Actinomyces israelii | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-849 | Actinomyces johnsonii | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-852 | Actinomyces massiliensis | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-176 | Actinomyces naeslundii | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-708 | Actinomyces oricola | Named | Cultivated | Oral (Abundance: Scarce) | Abscess | |
| HMT-043 | Actinomyces oris | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-079 | Actinomyces oris | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-144 | Actinomyces oris | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-169 | Actinomyces oris | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-171 | Actinomyces oris | Unnamed | Cultivated | Oral (Abundance: High) | ||
| HMT-893 | Actinomyces oris | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-746 | Actinomyces radicidentis | Named | Cultivated | Oral (Abundance: Scarce) | Infected Root Canal | |
| HMT-170 | Actinomyces sp. HMT-170 | Unnamed | Cultivated | Oral (Abundance: High) | ||
| HMT-175 | Actinomyces sp. HMT-175 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-177 | Actinomyces sp. HMT-177 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-403 | Actinomyces sp. HMT-403 | Unnamed | Cultivated | Oral (Abundance: No Data) | ||
| HMT-414 | Actinomyces sp. HMT-414 | Unnamed | Cultivated | Oral (Abundance: Low) | ||
| HMT-446 | Actinomyces sp. HMT-446 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-448 | Actinomyces sp. HMT-448 | Unnamed | Cultivated | Oral (Abundance: High) | ||
| HMT-449 | Actinomyces sp. HMT-449 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-525 | Actinomyces sp. HMT-525 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-896 | Actinomyces sp. HMT-896 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-897 | Actinomyces sp. HMT-897 | Unnamed | Cultivated | Oral (Abundance: Medium) | ||
| HMT-179 | Actinomyces timonensis | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-688 | Actinomyces viscosus | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-407 | Aeriscardovia sp. HMT-407 | Phylotype | Uncultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-312 | Aerococcus viridans | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | Opportunistic Pathogen (Abundance: Scarce) | |
| HMT-559 | Afipia broomeae | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | Opportunistic Pathogen (Abundance: No data) | |
| HMT-960 | Agathobacter rectalis | Named | Cultivated | Gastrointestinal Tract (Abundance: High) | ||
| HMT-531 | Aggregatibacter actinomycetemcomitans | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-545 | Aggregatibacter aphrophilus | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-426 | Aggregatibacter kilianii | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-720 | Aggregatibacter paraphrophilus (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-762 | Aggregatibacter segnis | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-458 | Aggregatibacter sp. HMT-458 | Unnamed | Cultivated | Oral (Abundance: Medium) | ||
| HMT-512 | Aggregatibacter sp. HMT-512 (DROPPED) | Dropped | Cultivated but Lost | Unassigned | ||
| HMT-513 | Aggregatibacter sp. HMT-513 | Unnamed | Cultivated | Oral (Abundance: Low) | ||
| HMT-898 | Aggregatibacter sp. HMT-898 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-949 | Aggregatibacter sp. HMT-949 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-485 | Agrobacterium tumefaciens | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-963 | Akkermansia muciniphila | Named | Cultivated | Gastrointestinal Tract (Abundance: Medium) | ||
| HMT-964 | Alistipes onderdonkii | Named | Cultivated | Gastrointestinal Tract (Abundance: High) | ||
| HMT-965 | Alistipes putredinis | Named | Cultivated | Gastrointestinal Tract (Abundance: High) | ||
| HMT-966 | Alistipes shahii | Named | Cultivated | Gastrointestinal Tract (Abundance: High) | ||
| HMT-045 | Alkalihalobacillus clausii | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-831 | Alloiococcus otitis | Named | Cultivated | Skin/Ear (Abundance: Scarce) | ||
| HMT-302 | Alloprevotella rava | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-308 | Alloprevotella sp. HMT-308 | Phylotype | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-413 | Alloprevotella sp. HMT-413 | Unnamed | Cultivated | Oral (Abundance: Medium) | ||
| HMT-473 | Alloprevotella sp. HMT-473 | Unnamed | Cultivated | Oral (Abundance: High) | ||
| HMT-474 | Alloprevotella sp. HMT-474 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-912 | Alloprevotella sp. HMT-912 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-913 | Alloprevotella sp. HMT-913 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-914 | Alloprevotella sp. HMT-914 | Phylotype | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-466 | Alloprevotella tannerae | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-198 | Alloscardovia omnicolens | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-859 | Anaerococcus lactolyticus | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-792 | Anaerococcus nagyae | Named | Cultivated | Skin (Abundance: Medium) | ||
| HMT-017 | Anaerococcus octavius | Named | Cultivated | Skin (Abundance: High) | Nasal (Abundance: Medium) | |
| HMT-738 | Anaerococcus prevotii | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Low) | ||
| HMT-290 | Anaerococcus sp. HMT-290 | Unnamed | Cultivated but Lost | Nasal (Abundance: High) | Skin (Abundance: High) | |
| HMT-295 | Anaerococcus sp. HMT-295 | Phylotype | Uncultivated | Skin (Abundance: Medium) | Nasal (Abundance: Low) | |
| HMT-788 | Anaerococcus tetradius | Named | Cultivated | Vaginal (Abundance: Scarce) | ||
| HMT-294 | Anaerococcus vaginimassiliensis | Phylotype | Uncultivated | Vaginal (Abundance: Scarce) | ||
| HMT-121 | Anaeroglobus geminatus | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-123 | Anaeroglobus massiliensis | Named NVP | Uncultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-995 | Anaerolinea thermophila | Named | Cultivated | Taxonomic Reference (Abundance: Scarce) | ||
| HMT-439 | Anaerolineae [G1] bacterium HMT-439 | Unnamed | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-386 | Anaerosphaera mikwangii | Unnamed | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-383 | Anaerovoracaceae [G1] bacterium HMT-383 | Phylotype | Uncultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-105 | Anaerovoracaceae [G1] infirmum | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-467 | Anaerovoracaceae [G1] sulci | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-091 | Anaerovoracaceae [G2] bacterium HMT-091 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-495 | Anaerovoracaceae [G3] bacterium HMT-495 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-950 | Anaerovoracaceae [G3] bacterium HMT-950 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-103 | Anaerovoracaceae [G4] bacterium HMT-103 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-369 | Anaerovoracaceae [G4] bacterium HMT-369 (DROPPED) | Dropped | Uncultivated | Unassigned | ||
| HMT-493 | Anaerovoracaceae [G5] bacterium HMT-493 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-759 | Anaerovoracaceae [G5] saphenum | Named | Cultivated | Oral (Abundance: Scarce) | Periodontal Pocket | |
| HMT-382 | Anaerovoracaceae [G8] bacterium HMT-382 | Phylotype | Uncultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-182 | Anoxybacillus flavithermus | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-660 | Aquamicrobium lusatiense | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-739 | Arachnia propionica | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-194 | Arachnia rubra | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-811 | Arcanobacterium haemolyticum | Named | Cultivated | Opportunistic Pathogen (Abundance: Scarce) | Pharyngitis | |
| HMT-190 | Arsenicicoccus sp. HMT-190 | Unnamed | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-229 | Arthrospira platensis | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-674 | Atopobium minutum | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-824 | Bacillus anthracis | Named | Cultivated | Pathogen (Abundance: Scarce) | ||
| HMT-468 | Bacillus subtilis | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-967 | Bacteroides caccae | Named | Cultivated | Gastrointestinal Tract (Abundance: High) | ||
| HMT-630 | Bacteroides heparinolyticus | Named | Cultivated | Oral (Abundance: Scarce) | Periodontal Pocket | |
| HMT-968 | Bacteroides ovatus | Named | Cultivated | Gastrointestinal Tract (Abundance: High) | ||
| HMT-787 | Bacteroides pyogenes | Named | Cultivated | Opportunistic Pathogen (Abundance: Scarce) | ||
| HMT-969 | Bacteroides stercoris | Named | Cultivated | Gastrointestinal Tract (Abundance: High) | ||
| HMT-970 | Bacteroides thetaiotaomicron | Named | Cultivated | Gastrointestinal Tract (Abundance: High) | ||
| HMT-971 | Bacteroides uniformis | Named | Cultivated | Gastrointestinal Tract (Abundance: High) | ||
| HMT-972 | Bacteroides xylanisolvens | Named | Cultivated | Gastrointestinal Tract (Abundance: High) | ||
| HMT-465 | Bacteroides zoogleoformans | Named | Cultivated | Oral (Abundance: Scarce) | Periodontal Pocket | |
| HMT-001 | Bartonella schoenbuchensis | Named | Cultivated | Zoonotic Pathogen (Abundance: Scarce) | ||
| HMT-039 | Bdellovibrio sp. HMT-039 | Phylotype | Uncultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-895 | Bifidobacterium animalis | Named | Cultivated | Gastrointestinal Tract (Abundance: Scarce) | Environmental -Food (Abundance: Scarce) | |
| HMT-889 | Bifidobacterium breve | Named | Cultivated | Vaginal (Abundance: Medium) | ||
| HMT-588 | Bifidobacterium dentium | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Medium) | ||
| HMT-862 | Bifidobacterium longum | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Low) | ||
| HMT-891 | Bifidobacterium scardovii | Named | Cultivated | Vaginal (Abundance: Medium) | ||
| HMT-890 | Bifidobacterium subtile | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-828 | Bordetella pertussis | Named | Cultivated | Pathogen (Abundance: Scarce) | ||
| HMT-636 | Bosea vestrisii (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-597 | Bradyrhizobium elkanii | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-340 | Brevibacterium paucivorans | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-590 | Brevundimonas diminuta | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | Opportunistic Pathogen (Abundance: Scarce) | |
| HMT-241 | Brochothrix thermosphacta | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Low) | ||
| HMT-192 | Brooklawnia sp. HMT-192 | Unnamed | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-544 | Brucella anthropi | Named | Cultivated | Pathogen (Abundance: Scarce) | ||
| HMT-603 | Bulleidia extructa | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-571 | Burkholderia cepacia | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | Opportunistic Pathogen (Abundance: Scarce) | |
| HMT-080 | Butyrivibrio sp. HMT-080 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-090 | Butyrivibrio sp. HMT-090 | Phylotype | Uncultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-455 | Butyrivibrio sp. HMT-455 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-994 | Caldilinea aerophila | Named | Cultivated | Taxonomic Reference (Abundance: Scarce) | ||
| HMT-433 | Campylobacter concisus | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-575 | Campylobacter concisus | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-580 | Campylobacter curvus | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-623 | Campylobacter gracilis | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-748 | Campylobacter rectus | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-763 | Campylobacter showae | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-044 | Campylobacter sp. HMT-044 | Phylotype | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-776 | Campylobacter sputorum | Named | Cultivated | Environmental -Non-Human Animal (Abundance: Scarce) | ||
| HMT-842 | Campylobacter ureolyticus | Named | Cultivated | Skin (Abundance: Medium) | ||
| HMT-332 | Capnocytophaga bilenii | Named NVP | Cultivated | Oral (Abundance: Medium) | ||
| HMT-326 | Capnocytophaga endodontalis | Unnamed | Cultivated | Oral (Abundance: Medium) | ||
| HMT-337 | Capnocytophaga gingivalis | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-325 | Capnocytophaga granulosa | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-627 | Capnocytophaga haemolytica | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-329 | Capnocytophaga leadbetteri | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-700 | Capnocytophaga ochracea | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-323 | Capnocytophaga sp. HMT-323 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-324 | Capnocytophaga sp. HMT-324 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-334 | Capnocytophaga sp. HMT-334 (DROPPED) | Dropped | Uncultivated | Unassigned | ||
| HMT-335 | Capnocytophaga sp. HMT-335 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-336 | Capnocytophaga sp. HMT-336 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-338 | Capnocytophaga sp. HMT-338 | Unnamed | Cultivated | Oral (Abundance: Medium) | ||
| HMT-380 | Capnocytophaga sp. HMT-380 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-412 | Capnocytophaga sp. HMT-412 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-863 | Capnocytophaga sp. HMT-863 | Unnamed | Cultivated | Oral (Abundance: Medium) | ||
| HMT-864 | Capnocytophaga sp. HMT-864 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-878 | Capnocytophaga sp. HMT-878 | Unnamed | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-901 | Capnocytophaga sp. HMT-901 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-902 | Capnocytophaga sp. HMT-902 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-903 | Capnocytophaga sp. HMT-903 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-775 | Capnocytophaga sputigena | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-633 | Cardiobacterium hominis | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-540 | Cardiobacterium valvarum | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-428 | Catonella massiliensis | Named NVP | Cultivated | Oral (Abundance: Medium) | ||
| HMT-165 | Catonella morbi | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-164 | Catonella sp. HMT-164 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-451 | Catonella sp. HMT-451 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-002 | Caulobacter sp. HMT-002 | Phylotype | Uncultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-374 | Cellulosimicrobium funkei | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-726 | Centipeda periodontii | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-733 | Chlamydia pneumoniae | Named | Cultivated | Pathogen (Abundance: Scarce) | ||
| HMT-984 | Chlorobium limicola | Named | Cultivated | Taxonomic Reference (Abundance: Scarce) | ||
| HMT-319 | Chryseobacterium sp. HMT-319 | Phylotype | Uncultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-422 | Cloacibacterium normanense | Named NVP | Uncultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-206 | Cloacibacterium sp. HMT-206 | Phylotype | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-093 | Clostridiales [F1 G1] bacterium HMT-093 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-402 | Clostridiales [F1 G2] bacterium HMT-402 | Phylotype | Uncultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-876 | Clostridiales [F3 G1] bacterium HMT-876 | Unnamed | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-858 | Comamonas testosteroni | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | Opportunistic Pathogen (Abundance: No data) | |
| HMT-019 | Corynebacterium accolens | Named | Cultivated | Nasal (Abundance: High) | ||
| HMT-030 | Corynebacterium afermentans | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-031 | Corynebacterium amycolatum | Named | Cultivated | Nasal (Abundance: Scarce) | Skin (Abundance: Scarce) | |
| HMT-033 | Corynebacterium appendicis | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-034 | Corynebacterium aurimucosum | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-445 | Corynebacterium aurimucosum | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-450 | Corynebacterium aurimucosum | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-208 | Corynebacterium bovis | Named | Cultivated | Nasal (Abundance: Scarce) | Environmental -Non-Human Animal (Abundance: Scarce) | |
| HMT-341 | Corynebacterium coyleae | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-591 | Corynebacterium diphtheriae | Named | Cultivated | Pathogen (Abundance: Scarce) | ||
| HMT-595 | Corynebacterium durum | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-207 | Corynebacterium gottingense | Unnamed | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-047 | Corynebacterium jeikeium | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-783 | Corynebacterium kefirresidentii | Named NVP | Cultivated | Nasal (Abundance: High) | Skin (Abundance: High) | |
| HMT-049 | Corynebacterium kroppenstedtii | Named | Cultivated | Skin (Abundance: High) | Nasal (Abundance: Medium) | |
| HMT-454 | Corynebacterium macclintockiae | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-050 | Corynebacterium macginleyi | Named | Cultivated | Nasal (Abundance: Scarce) | ||
| HMT-333 | Corynebacterium massiliense | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-328 | Corynebacterium mastitidis | Named | Cultivated | Skin (Abundance: Scarce) | Ocular (Abundance: Scarce) | |
| HMT-666 | Corynebacterium matruchotii | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-053 | Corynebacterium minutissimum | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-835 | Corynebacterium mucifaciens | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-832 | Corynebacterium otitidis | Named | Cultivated | Nasal (Abundance: Low) | Skin/Ear (Abundance: Low) | |
| HMT-054 | Corynebacterium pilbarense | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-059 | Corynebacterium propinquum | Named | Cultivated | Nasal (Abundance: Medium) | ||
| HMT-060 | Corynebacterium pseudodiphtheriticum | Named | Cultivated | Nasal (Abundance: High) | ||
| HMT-062 | Corynebacterium simulans | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-063 | Corynebacterium singulare | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-072 | Corynebacterium striatum | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-077 | Corynebacterium tuberculostearicum | Named | Cultivated | Nasal (Abundance: High) | Skin (Abundance: High) | |
| HMT-184 | Corynebacterium tuscaniense | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | Opportunistic Pathogen (Abundance: No data) | |
| HMT-853 | Corynebacterium urealyticum | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-753 | Cronobacter sakazakii | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | Opportunistic Pathogen (Abundance: No data) | |
| HMT-579 | Cryptobacterium curtum | Named | Cultivated | Oral (Abundance: Scarce) | Periodontal Pocket | |
| HMT-027 | Cupriavidus gilardii | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | Opportunistic Pathogen (Abundance: No data) | |
| HMT-530 | Cutibacterium acnes | Named | Cultivated | Nasal (Abundance: High) | Skin (Abundance: High) | |
| HMT-552 | Cutibacterium avidum | Named | Cultivated | Skin (Abundance: Medium) | Nasal (Abundance: Low) | |
| HMT-114 | Cutibacterium granulosum | Named | Cultivated | Skin (Abundance: High) | Nasal (Abundance: Medium) | |
| HMT-193 | Cutibacterium modestum | Unnamed | Cultivated | Skin (Abundance: Low) | ||
| HMT-791 | Cutibacterium namnetense | Named | Cultivated | Skin (Abundance: Medium) | Nasal (Abundance: Low) | |
| HMT-023 | Delftia acidovorans | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-354 | Dermabacter hominis | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-041 | Desulfobulbus oralis | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-703 | Desulfomicrobium orale | Named | Cultivated | Oral (Abundance: Scarce) | Periodontal Pocket | |
| HMT-605 | Desulfovibrio fairfieldensis | Named | Cultivated | Gastrointestinal Tract (Abundance: Scarce) | Opportunistic Pathogen (Abundance: No data) | |
| HMT-040 | Desulfovibrio sp. HMT-040 | Phylotype | Uncultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-118 | Dialister invisus | Named | Cultivated | Oral (Abundance: Medium) | Gastrointestinal Tract (Abundance: Medium) | |
| HMT-843 | Dialister micraerophilus | Named | Cultivated | Vaginal (Abundance: Medium) | Oral (Abundance: Low) | |
| HMT-736 | Dialister pneumosintes | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-119 | Dialister sp. HMT-119 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-502 | Dialister sp. HMT-502 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-368 | Dietzia cinnamea | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | Opportunistic Pathogen (Abundance: No data) | |
| HMT-813 | Dolosigranulum pigrum | Named | Cultivated | Nasal (Abundance: Medium) | ||
| HMT-654 | Eggerthella lenta | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-569 | Eggerthia catenaformis | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-577 | Eikenella corrodens | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-009 | Eikenella sp. HMT-009 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-011 | Eikenella sp. HMT-011 | Unnamed | Cultivated but Lost | Oral (Abundance: Scarce) | ||
| HMT-196 | Enhydrobacter aerosaccus | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-565 | Enterobacter cancerogenus | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | Opportunistic Pathogen (Abundance: Scarce) | |
| HMT-634 | Enterobacter hormaechei | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Low) | ||
| HMT-801 | Enterococcus casseliflavus | Named | Cultivated | Gastrointestinal Tract (Abundance: Scarce) | Opportunistic Pathogen (Abundance: No data) | |
| HMT-880 | Enterococcus durans | Named | Cultivated | Opportunistic Pathogen (Abundance: Scarce) | ||
| HMT-604 | Enterococcus faecalis | Named | Cultivated | Opportunistic Pathogen (Abundance: Scarce) | ||
| HMT-803 | Enterococcus italicus | Named | Cultivated | Environmental -Food (Abundance: Scarce) | ||
| HMT-802 | Enterococcus saccharolyticus | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-999 | Eremiobacterota [C1 O1 F1 G1] bacterium HMT-999 | Phylotype | Uncultivated | Taxonomic Reference (Abundance: Scarce) | ||
| HMT-484 | Erysipelothrix tonsillarum | Named | Cultivated | Environmental -Non-Human Animal (Abundance: Scarce) | ||
| HMT-904 | Erysipelotrichaceae [G1] bacterium HMT-904 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-905 | Erysipelotrichaceae [G1] bacterium HMT-905 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-747 | Erythrobacter ramosus | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-007 | Erythrobacter tepidarius | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-574 | Escherichia coli | Named | Cultivated | Gastrointestinal Tract (Abundance: Medium) | ||
| HMT-655 | Eubacterium limosum | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-961 | Faecalibacterium prausnitzii | Named | Cultivated | Gastrointestinal Tract (Abundance: High) | ||
| HMT-416 | Fannyhessea sp. HMT-416 | Unnamed | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-814 | Fannyhessea vaginae | Named | Cultivated | Vaginal (Abundance: High) | ||
| HMT-935 | Fastidiosipila sanguinis | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-539 | Filifactor alocis | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-662 | Finegoldia magna | Named | Cultivated | Nasal (Abundance: Medium) | Skin (Abundance: Medium) | |
| HMT-320 | Flavitalea sp. HMT-320 | Phylotype | Uncultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-363 | Fretibacterium fastidiosum | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-358 | Fretibacterium sp. HMT-358 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-359 | Fretibacterium sp. HMT-359 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-360 | Fretibacterium sp. HMT-360 | Phylotype | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-361 | Fretibacterium sp. HMT-361 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-362 | Fretibacterium sp. HMT-362 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-452 | Fretibacterium sp. HMT-452 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-453 | Fretibacterium sp. HMT-453 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-420 | Fusobacterium animalis | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-860 | Fusobacterium gonidiaformans | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-953 | Fusobacterium hwasookii | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-689 | Fusobacterium naviforme | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-690 | Fusobacterium necrophorum | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-698 | Fusobacterium nucleatum_sensu_stricto | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-201 | Fusobacterium periodonticum | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-202 | Fusobacterium polymorphum | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-429 | Fusobacterium pseudoperiodonticum | Named NVP | Cultivated | Oral (Abundance: High) | ||
| HMT-447 | Fusobacterium simiae | Named | Cultivated | Oral (Abundance: No Data) | ||
| HMT-203 | Fusobacterium sp. HMT-203 | Unnamed | Cultivated | Oral (Abundance: Medium) | ||
| HMT-204 | Fusobacterium sp. HMT-204 | Phylotype | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-205 | Fusobacterium sp. HMT-205 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-248 | Fusobacterium sp. HMT-248 | Unnamed | Cultivated | Oral (Abundance: High) | ||
| HMT-370 | Fusobacterium sp. HMT-370 | Unnamed | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-200 | Fusobacterium vincentii | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-464 | Fusobacterium watanabei | Named | Cultivated | Oral (Abundance: No Data) | ||
| HMT-557 | Gallibacter brachy | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-867 | Gardnerella leopoldii | Named | Cultivated | Vaginal (Abundance: High) | ||
| HMT-846 | Gardnerella piotii | Named | Cultivated | Vaginal (Abundance: High) | ||
| HMT-868 | Gardnerella swidsinskii | Named | Cultivated | Vaginal (Abundance: High) | ||
| HMT-829 | Gardnerella vaginalis | Named | Cultivated | Vaginal (Abundance: High) | ||
| HMT-555 | Gemella bergeri | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-434 | Gemella haemolysans | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-626 | Gemella haemolysans | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-928 | Gemella massiliensis | Unnamed | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-046 | Gemella morbillorum | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-757 | Gemella sanguinis | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-534 | Granulicatella adiacens | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-596 | Granulicatella elegans | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-316 | Haematobacter missouriensis | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-535 | Haemophilus aegyptius | Named | Cultivated | Pathogen (Abundance: No Data) | ||
| HMT-821 | Haemophilus ducreyi | Named | Cultivated | Pathogen (Abundance: Scarce) | ||
| HMT-851 | Haemophilus haemolyticus | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-641 | Haemophilus influenzae | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-945 | Haemophilus parahaemolyticus | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-718 | Haemophilus parainfluenzae | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-035 | Haemophilus paraphrohaemolyticus | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-946 | Haemophilus pittmaniae | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-036 | Haemophilus sp. HMT-036 | Unnamed | Cultivated | Oral (Abundance: High) | ||
| HMT-259 | Haemophilus sp. HMT-259 (DROPPED) | Dropped | Uncultivated | Unassigned | ||
| HMT-908 | Haemophilus sp. HMT-908 (DROPPED) | Dropped | Uncultivated | Unassigned | ||
| HMT-944 | Haemophilus sputorum | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-583 | Hallella dentalis | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-794 | Hallella multisaccharivorax | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-315 | Hallella sp. HMT-315 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-376 | Hallella sp. HMT-376 | Unnamed | Cultivated | Oral (Abundance: Low) | ||
| HMT-515 | Hallella sp. HMT-515 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-812 | Helicobacter pylori | Named | Cultivated | Gastrointestinal Tract (Abundance: Low) | ||
| HMT-962 | Hominimerdicola aceti | Named | Cultivated | Gastrointestinal Tract (Abundance: High) | ||
| HMT-673 | Hornefia minuta | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-694 | Hornefia nodatum | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-562 | Hoylesella buccalis | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Medium) | ||
| HMT-600 | Hoylesella enoeca | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-526 | Hoylesella koreensis | Named NVP | Uncultivated | Oral (Abundance: Low) | ||
| HMT-658 | Hoylesella loescheii | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-665 | Hoylesella marshii | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-299 | Hoylesella nanceiensis | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-705 | Hoylesella oralis | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-303 | Hoylesella pleuritidis | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-781 | Hoylesella saccharolytica | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-795 | Hoylesella shahii | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-301 | Hoylesella sp. HMT-301 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-317 | Hoylesella sp. HMT-317 | Unnamed | Cultivated | Oral (Abundance: High) | ||
| HMT-472 | Hoylesella sp. HMT-472 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-475 | Hoylesella sp. HMT-475 | Unnamed | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-942 | Hoylesella sp. HMT-942 | Phylotype | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-982 | Ignavibacterium album | Named | Cultivated | Taxonomic Reference (Abundance: Scarce) | ||
| HMT-339 | Janibacter indicus | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-243 | Jeotgalicoccus marinus | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-635 | Johnsonella ignava | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-166 | Johnsonella sp. HMT-166 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-777 | Jonquetella anthropi | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-582 | Kingella denitrificans | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-646 | Kingella kingae | Named | Cultivated | Oral (Abundance: Scarce) | Opportunistic Pathogen (Abundance: No data) | Throat in young children |
| HMT-405 | Kingella negevensis | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-706 | Kingella oralis | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-012 | Kingella sp. HMT-012 | Phylotype | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-459 | Kingella sp. HMT-459 | Phylotype | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-932 | Kingella sp. HMT-932 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-153 | Klebsiella aerogenes | Named | Cultivated | Nasal (Abundance: Medium) | ||
| HMT-731 | Klebsiella pneumoniae | Named | Cultivated | Nasal (Abundance: Medium) | Opportunistic Pathogen (Abundance: Scarce) | |
| HMT-865 | Kluyvera ascorbata | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-189 | Kocuria atrinae | Named NVP | Uncultivated | Environmental -Food (Abundance: Scarce) | ||
| HMT-084 | Kocuria palustris | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-197 | Kocuria rhizophila | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-855 | Kytococcus sedentarius | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | Opportunistic Pathogen (Abundance: Scarce) | |
| HMT-460 | Lachnoanaerobaculum gingivalis | Named NVP | Cultivated | Oral (Abundance: Low) | ||
| HMT-082 | Lachnoanaerobaculum orale | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-494 | Lachnoanaerobaculum saburreum | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-083 | Lachnoanaerobaculum sp. HMT-083 | Unnamed | Cultivated | Oral (Abundance: Medium) | ||
| HMT-089 | Lachnoanaerobaculum sp. HMT-089 | Phylotype | Uncultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-430 | Lachnoanaerobaculum sp. HMT-430 | Unnamed | Cultivated | Oral (Abundance: Medium) | ||
| HMT-441 | Lachnoanaerobaculum sp. HMT-441 | Unnamed | Cultivated | Oral (Abundance: Low) | ||
| HMT-496 | Lachnoanaerobaculum sp. HMT-496 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-107 | Lachnoanaerobaculum umeaense | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-924 | Lachnocurva vaginae | Phylotype | Uncultivated | Vaginal (Abundance: Scarce) | ||
| HMT-094 | Lachnospiraceae [G10] bacterium HMT-094 | Phylotype | Uncultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-088 | Lachnospiraceae [G2] bacterium HMT-088 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-096 | Lachnospiraceae [G2] bacterium HMT-096 | Unnamed | Cultivated | Oral (Abundance: Medium) | ||
| HMT-100 | Lachnospiraceae [G3] bacterium HMT-100 | Phylotype | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-086 | Lachnospiraceae [G7] bacterium HMT-086 | Phylotype | Uncultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-163 | Lachnospiraceae [G7] bacterium HMT-163 | Phylotype | Uncultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-500 | Lachnospiraceae [G8] bacterium HMT-500 | Unnamed | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-568 | Lacticaseibacillus casei | Named | Cultivated | Environmental -Food (Abundance: Scarce) | ||
| HMT-716 | Lacticaseibacillus paracasei | Named | Cultivated | Environmental -Food (Abundance: Scarce) | ||
| HMT-749 | Lacticaseibacillus rhamnosus | Named | Cultivated | Gastrointestinal Tract (Abundance: Scarce) | ||
| HMT-883 | Lactiplantibacillus pentosus | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-861 | Lactiplantibacillus plantarum | Named | Cultivated | Environmental -Food (Abundance: Scarce) | ||
| HMT-529 | Lactobacillus acidophilus | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-817 | Lactobacillus crispatus | Named | Cultivated | Vaginal (Abundance: High) | ||
| HMT-615 | Lactobacillus gasseri | Named | Cultivated | Vaginal (Abundance: High) | ||
| HMT-838 | Lactobacillus iners | Named | Cultivated | Vaginal (Abundance: High) | ||
| HMT-839 | Lactobacillus jensenii | Named | Cultivated | Vaginal (Abundance: High) | ||
| HMT-819 | Lactobacillus johnsonii | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | Environmental -Food (Abundance: Scarce) | |
| HMT-461 | Lactobacillus ultunensis | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | Environmental -Food (Abundance: Scarce) | |
| HMT-804 | Lactococcus lactis | Named | Cultivated | Environmental -Food (Abundance: Scarce) | ||
| HMT-723 | Lancefieldella parvula | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-750 | Lancefieldella rimae | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-199 | Lancefieldella sp. HMT-199 | Unnamed | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-409 | Lautropia dentalis | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-022 | Lautropia mirabilis | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-173 | Lawsonella clevelandensis | Named | Cultivated | Nasal (Abundance: Medium) | ||
| HMT-881 | Lentilactobacillus buchneri | Named | Cultivated | Environmental -Food (Abundance: Scarce) | ||
| HMT-424 | Lentilactobacillus kisonensis | Named | Cultivated | Environmental -Food (Abundance: Scarce) | ||
| HMT-418 | Lentilactobacillus parafarraginis | Named | Cultivated | Environmental -Food (Abundance: Scarce) | ||
| HMT-884 | Lentilactobacillus rapi | Named | Cultivated | Environmental -Food (Abundance: Scarce) | ||
| HMT-025 | Leptothrix sp. HMT-025 | Phylotype | Uncultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-266 | Leptothrix sp. HMT-266 | Phylotype | Uncultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-563 | Leptotrichia buccalis | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-224 | Leptotrichia hofstadii | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-213 | Leptotrichia hongkongensis | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-214 | Leptotrichia shahii | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-218 | Leptotrichia sp. HMT-218 | Unnamed | Cultivated | Oral (Abundance: Medium) | ||
| HMT-221 | Leptotrichia sp. HMT-221 | Unnamed | Cultivated | Oral (Abundance: Medium) | ||
| HMT-223 | Leptotrichia sp. HMT-223 | Unnamed | Cultivated | Oral (Abundance: Low) | ||
| HMT-225 | Leptotrichia sp. HMT-225 | Unnamed | Cultivated | Oral (Abundance: Medium) | ||
| HMT-417 | Leptotrichia sp. HMT-417 | Unnamed | Cultivated | Oral (Abundance: High) | ||
| HMT-462 | Leptotrichia sp. HMT-462 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-463 | Leptotrichia sp. HMT-463 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-498 | Leptotrichia sp. HMT-498 | Unnamed | Cultivated | Oral (Abundance: Low) | ||
| HMT-847 | Leptotrichia sp. HMT-847 | Unnamed | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-879 | Leptotrichia sp. HMT-879 | Unnamed | Cultivated | Oral (Abundance: Low) | ||
| HMT-909 | Leptotrichia sp. HMT-909 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-222 | Leptotrichia wadei | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-210 | Leptotrichiaceae [G1] sp. HMT-210 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-220 | Leptotrichiaceae [G1] sp. HMT-220 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-558 | Levilactobacillus brevis | Named | Cultivated | Environmental -Food (Abundance: Scarce) | ||
| HMT-756 | Ligilactobacillus salivarius | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-816 | Limosilactobacillus coleohominis | Named | Cultivated | Vaginal (Abundance: Low) | ||
| HMT-608 | Limosilactobacillus fermentum | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-709 | Limosilactobacillus oris | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-882 | Limosilactobacillus panis | Named | Cultivated | Environmental -Food (Abundance: Scarce) | ||
| HMT-818 | Limosilactobacillus reuteri | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | Environmental -Food (Abundance: Scarce) | |
| HMT-938 | Limosilactobacillus reuteri (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-052 | Limosilactobacillus sp. HMT-052 | Unnamed | Cultivated but Lost | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-051 | Limosilactobacillus vaginalis | Named | Cultivated | Vaginal (Abundance: Low) | ||
| HMT-825 | Listeria monocytogenes | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-614 | Lysinibacillus fusiformis | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-841 | Megasphaera lornae | Phylotype | Uncultivated | Vaginal (Abundance: Medium) | ||
| HMT-122 | Megasphaera micronuciformis | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-983 | Melioribacter roseus | Named | Cultivated | Taxonomic Reference (Abundance: Scarce) | ||
| HMT-659 | Mesorhizobium japonicum | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-561 | Metamycoplasma buccale | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-606 | Metamycoplasma faucium | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-632 | Metamycoplasma hominis | Named | Cultivated | Vaginal (Abundance: Medium) | ||
| HMT-704 | Metamycoplasma orale | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-754 | Metamycoplasma salivarium | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-815 | Methanobrevibacter oralis | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-330 | Micavibrio aeruginosavorus | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-185 | Microbacterium ginsengisoli | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-186 | Microbacterium sp. HMT-186 | Unnamed | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-087 | Micrococcus luteus | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | Opportunistic Pathogen (Abundance: Scarce) | |
| HMT-684 | Mitsuokella multacida | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-131 | Mitsuokella sp. HMT-131 | Unnamed | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-521 | Mitsuokella sp. HMT-521 | Phylotype | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-830 | Mobiluncus mulieris | Named | Cultivated | Vaginal (Abundance: Scarce) | ||
| HMT-593 | Mogibacterium diversum | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-691 | Mogibacterium neglectum | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-742 | Mogibacterium pumilum | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-042 | Mogibacterium timidum | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-008 | Mogibacterium vescum | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-504 | Mollicutes [O1 F1 G1] bacterium HMT-504 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-906 | Mollicutes [O2 F2 G2] bacterium HMT-906 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-833 | Moraxella catarrhalis | Named | Cultivated | Nasal (Abundance: Medium) | Oral (Abundance: Medium) | Throat |
| HMT-154 | Moraxella lincolnii | Named | Cultivated | Nasal (Abundance: Medium) | ||
| HMT-098 | Moraxella nonliquefaciens | Named | Cultivated | Nasal (Abundance: High) | ||
| HMT-711 | Moraxella osloensis | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-276 | Moraxella sp. HMT-276 | Phylotype | Uncultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-097 | Moryella sp. HMT-097 | Unnamed | Cultivated | Oral (Abundance: Medium) | ||
| HMT-823 | Mycobacterium leprae | Named | Cultivated | Pathogen (Abundance: Scarce) | ||
| HMT-822 | Mycobacterium tuberculosis | Named | Cultivated | Pathogen (Abundance: Scarce) | ||
| HMT-692 | Mycolicibacterium neoaurum | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | Opportunistic Pathogen (Abundance: No data) | |
| HMT-616 | Mycoplasmoides genitalium | Named | Cultivated | Pathogen (Abundance: Scarce) | ||
| HMT-732 | Mycoplasmoides pneumoniae | Named | Cultivated | Pathogen (Abundance: Scarce) | ||
| HMT-607 | Mycoplasmopsis fermentans | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-656 | Mycoplasmopsis lipophila | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-870 | Nanogingivalis gingivitcus | Named NVP | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-399 | Nanogingivalis sp. HMT-399 | Unnamed | Cultivated | Oral (Abundance: No Data) | ||
| HMT-400 | Nanogingivalis sp. HMT-400 | Unnamed | Cultivated | Oral (Abundance: No Data) | ||
| HMT-401 | Nanogingivalis sp. HMT-401 | Unnamed | Cultivated | Oral (Abundance: No Data) | ||
| HMT-356 | Nanoperiomorbus periodonticus | Named NVP | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-437 | Nanoperiomorbus sp. HMT-437 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-957 | Nanosynbacter featherlites | Unnamed | Cultivated | Oral (Abundance: Medium) | ||
| HMT-488 | Nanosynbacter fur | Unnamed | Cultivated | Oral (Abundance: Low) | ||
| HMT-952 | Nanosynbacter lyticus | Unnamed | Cultivated | Oral (Abundance: Medium) | ||
| HMT-352 | Nanosynbacter sp. HMT-352 | Phylotype | Uncultivated | Oral (Abundance: High) | ||
| HMT-353 | Nanosynbacter sp. HMT-353 | Unnamed | Cultivated | Oral (Abundance: Low) | ||
| HMT-367 | Nanosyncoccus alces | Named NVP | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-371 | Nanosyncoccus nanoralicus | Named NVP | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-351 | Nanosyncoccus sp. HMT-351 | Phylotype | Uncultivated | Oral (Abundance: High) | ||
| HMT-364 | Nanosyncoccus sp. HMT-364 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-013 | Neisseria bacilliformis | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-956 | Neisseria cinerea | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-598 | Neisseria elongata | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-609 | Neisseria flava | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-610 | Neisseria flavescens | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-621 | Neisseria gonorrhoeae | Named | Cultivated | Pathogen (Abundance: Scarce) | ||
| HMT-649 | Neisseria lactamica | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-099 | Neisseria macacae | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-669 | Neisseria meningitidis | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-682 | Neisseria mucosa | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-014 | Neisseria oralis | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-101 | Neisseria perflava | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-729 | Neisseria pharyngis (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-737 | Neisseria polysaccharea | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-764 | Neisseria sicca | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-015 | Neisseria sp. HMT-015 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-016 | Neisseria sp. HMT-016 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-018 | Neisseria sp. HMT-018 | Phylotype | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-020 | Neisseria sp. HMT-020 | Unnamed | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-499 | Neisseria sp. HMT-499 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-523 | Neisseria sp. HMT-523 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-476 | Neisseria subflava | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-092 | Neisseria weaveri | Named | Cultivated | Environmental -Non-Human Animal (Abundance: Scarce) | Zoonotic Pathogen (Abundance: Scarce) | Dog Bites |
| HMT-174 | Neisseriaceae [G1] bacterium HMT-174 | Phylotype | Uncultivated | Nasal (Abundance: Medium) | Skin (Abundance: Medium) | |
| HMT-327 | Neisseriaceae [G1] bacterium HMT-327 | Phylotype | Uncultivated | Nasal (Abundance: Medium) | Skin (Abundance: Medium) | |
| HMT-006 | Novosphingobium humi | Named NVP | Uncultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-342 | Novosphingobium panipatense | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-516 | Odoribacter sp. HMT-516 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-280 | Odoribacteraceae [G3] bacterium HMT-280 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-281 | Odoribacteraceae [G3] bacterium HMT-281 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-365 | Odoribacteraceae [G3] bacterium HMT-365 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-436 | Odoribacteraceae [G3] bacterium HMT-436 | Phylotype | Uncultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-503 | Odoribacteraceae [G3] bacterium HMT-503 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-899 | Odoribacteraceae [G3] bacterium HMT-899 | Phylotype | Uncultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-509 | Odoribacteraceae [G4] bacterium HMT-509 | Phylotype | Uncultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-505 | Odoribacteraceae [G5] bacterium HMT-505 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-507 | Odoribacteraceae [G5] bacterium HMT-507 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-511 | Odoribacteraceae [G5] bacterium HMT-511 | Phylotype | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-911 | Odoribacteraceae [G7] bacterium HMT-911 | Phylotype | Uncultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-810 | Olegusella massiliensis | Unnamed | Cultivated | Vaginal (Abundance: Scarce) | ||
| HMT-809 | Olsenella phocaeensis | Unnamed | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-806 | Olsenella profusa | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-807 | Olsenella sp. HMT-807 | Unnamed | Cultivated | Oral (Abundance: Medium) | ||
| HMT-939 | Olsenella sp. HMT-939 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-038 | Olsenella uli | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-108 | Oribacterium asaccharolyticum | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-934 | Oribacterium parvum | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-457 | Oribacterium sinus | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-078 | Oribacterium sp. HMT-078 | Unnamed | Cultivated | Oral (Abundance: Medium) | ||
| HMT-102 | Oribacterium sp. HMT-102 | Unnamed | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-372 | Oribacterium sp. HMT-372 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-028 | Oryzomicrobium terrae | Unnamed | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-894 | Ottowia sp. HMT-894 | Unnamed | Cultivated | Oral (Abundance: Low) | ||
| HMT-211 | Paenacidovorax caeni | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-921 | Paenibacillus glucanolyticus | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-786 | Paenibacillus phoenicis | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-048 | Paenibacillus typhae | Named NVP | Uncultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-274 | Paludibacteraceae [G1] bacterium HMT-274 | Unnamed | Cultivated | Oral (Abundance: High) | ||
| HMT-973 | Parabacteroides distasonis | Named | Cultivated | Gastrointestinal Tract (Abundance: High) | ||
| HMT-974 | Parabacteroides merdae | Named | Cultivated | Gastrointestinal Tract (Abundance: High) | ||
| HMT-104 | Paracoccus yeei | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | Opportunistic Pathogen (Abundance: Scarce) | |
| HMT-586 | Parascardovia denticolens | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-111 | Parvimonas micra | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-110 | Parvimonas sp. HMT-110 | Unnamed | Cultivated | Oral (Abundance: Medium) | ||
| HMT-393 | Parvimonas sp. HMT-393 | Unnamed | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-348 | Parvisynbacter sp. HMT-348 | Phylotype | Uncultivated | Oral (Abundance: High) | ||
| HMT-390 | Parvisynbacter sp. HMT-390 | Unnamed | Cultivated | Oral (Abundance: No Data) | ||
| HMT-871 | Patescibacteria [C1 O1 F1 G1] bacterium HMT-871 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-872 | Patescibacteria [C1 O1 F1 G1] bacterium HMT-872 | Phylotype | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-873 | Patescibacteria [C1 O1 F1 G2] bacterium HMT-873 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-996 | Patescibacteria [C1 O1 F1 G2] bacterium HMT-996 (DROPPED) | Dropped | Uncultivated | Unassigned | ||
| HMT-997 | Patescibacteria [C1 O1 F1 G2] bacterium HMT-997 (DROPPED) | Dropped | Uncultivated | Unassigned | ||
| HMT-318 | Pedobacter sp. HMT-318 | Phylotype | Uncultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-321 | Pedobacter sp. HMT-321 | Phylotype | Uncultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-933 | Pedobacter sp. HMT-933 | Phylotype | Uncultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-848 | Peptidiphaga gingivicola | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-183 | Peptidiphaga sp. HMT-183 | Unnamed | Cultivated | Oral (Abundance: High) | ||
| HMT-796 | Peptoanaerobacter margaretiae | Named | Cultivated | Oral (Abundance: No Data) | ||
| HMT-081 | Peptoanaerobacter sp. HMT-081 | Unnamed | Cultivated | Oral (Abundance: Low) | ||
| HMT-922 | Peptoanaerobacter sp. HMT-922 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-106 | Peptoanaerobacter yurii | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-377 | Peptoanaerobacter yurii | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-167 | Peptococcus sp. HMT-167 | Unnamed | Cultivated but Lost | Oral (Abundance: Low) | ||
| HMT-168 | Peptococcus sp. HMT-168 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-113 | Peptoniphilaceae [G1] bacterium HMT-113 | Unnamed | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-790 | Peptoniphilaceae [G2] bacterium HMT-790 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-929 | Peptoniphilaceae [G3] bacterium HMT-929 | Unnamed | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Low) | ||
| HMT-548 | Peptoniphilus asaccharolyticus | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-187 | Peptoniphilus grossensis | Unnamed | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-109 | Peptoniphilus harei | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Medium) | ||
| HMT-840 | Peptoniphilus indolicus | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-836 | Peptoniphilus lacrimalis | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Low) | ||
| HMT-648 | Peptoniphilus Lacrimalis-DROPPED (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-784 | Peptoniphilus lacydonensis | Named | Cultivated | Nasal (Abundance: High) | Skin (Abundance: Medium) | |
| HMT-542 | Peptostreptococcus anaerobius | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-112 | Peptostreptococcus stomatis | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-272 | Phocaeicola abscessus | Unnamed | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-975 | Phocaeicola dorei | Named | Cultivated | Gastrointestinal Tract (Abundance: High) | ||
| HMT-976 | Phocaeicola massiliensis | Named | Cultivated | Gastrointestinal Tract (Abundance: High) | ||
| HMT-977 | Phocaeicola plebeius | Named | Cultivated | Gastrointestinal Tract (Abundance: High) | ||
| HMT-978 | Phocaeicola vulgatus | Named | Cultivated | Gastrointestinal Tract (Abundance: High) | ||
| HMT-547 | Porphyromonas asaccharolytica | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Low) | ||
| HMT-283 | Porphyromonas catoniae | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-273 | Porphyromonas endodontalis | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-619 | Porphyromonas gingivalis | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-279 | Porphyromonas pasteri | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-275 | Porphyromonas sp. HMT-275 | Unnamed | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-277 | Porphyromonas sp. HMT-277 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-278 | Porphyromonas sp. HMT-278 | Unnamed | Cultivated | Oral (Abundance: Medium) | ||
| HMT-284 | Porphyromonas sp. HMT-284 | Unnamed | Cultivated but Lost | Oral (Abundance: Medium) | ||
| HMT-285 | Porphyromonas sp. HMT-285 (DROPPED) | Dropped | Uncultivated | Unassigned | ||
| HMT-395 | Porphyromonas sp. HMT-395 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-930 | Porphyromonas sp. HMT-930 | Phylotype | Uncultivated | Oral (Abundance: High) | ||
| HMT-785 | Porphyromonas uenonis | Named | Cultivated | Vaginal (Abundance: Medium) | ||
| HMT-797 | Prevotella amnii | Named | Cultivated | Vaginal (Abundance: Medium) | ||
| HMT-943 | Prevotella aurantiaca | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-556 | Prevotella bivia | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Low) | ||
| HMT-979 | Prevotella copri | Named | Cultivated | Gastrointestinal Tract (Abundance: High) | ||
| HMT-291 | Prevotella denticola | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-782 | Prevotella fusca | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-298 | Prevotella histicola | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-820 | Prevotella illustrans | Unnamed | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-643 | Prevotella intermedia | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-313 | Prevotella jejuni | Unnamed | Cultivated | Oral (Abundance: High) | ||
| HMT-469 | Prevotella melaninogenica | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-378 | Prevotella micans | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-685 | Prevotella multiformis | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-693 | Prevotella nigrescens | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-714 | Prevotella pallens | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-885 | Prevotella scopos | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-292 | Prevotella sp. HMT-292 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-293 | Prevotella sp. HMT-293 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-296 | Prevotella sp. HMT-296 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-304 | Prevotella sp. HMT-304 | Phylotype | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-310 | Prevotella sp. HMT-310 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-314 | Prevotella sp. HMT-314 | Unnamed | Cultivated | Oral (Abundance: Medium) | ||
| HMT-396 | Prevotella sp. HMT-396 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-410 | Prevotella sp. HMT-410 | Unnamed | Cultivated | Oral (Abundance: Medium) | ||
| HMT-798 | Prevotella timonensis | Named | Cultivated | Vaginal (Abundance: Medium) | ||
| HMT-572 | Prevotella veroralis | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-306 | Prevotella vespertina | Unnamed | Cultivated | Oral (Abundance: High) | ||
| HMT-915 | Propionibacteriaceae [G1] bacterium HMT-915 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-191 | Propionibacterium acidifaciens | Named | Cultivated | Oral (Abundance: Scarce) | Caries | |
| HMT-676 | Proteus mirabilis | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | Opportunistic Pathogen (Abundance: No data) | |
| HMT-845 | Pseudoleptotrichia goodfellowii | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-212 | Pseudoleptotrichia sp. HMT-212 | Unnamed | Cultivated | Oral (Abundance: Medium) | ||
| HMT-215 | Pseudoleptotrichia sp. HMT-215 | Unnamed | Cultivated | Oral (Abundance: High) | ||
| HMT-217 | Pseudoleptotrichia sp. HMT-217 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-219 | Pseudoleptotrichia sp. HMT-219 | Phylotype | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-392 | Pseudoleptotrichia sp. HMT-392 | Phylotype | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-536 | Pseudomonas aeruginosa | Named | Cultivated | Opportunistic Pathogen (Abundance: Scarce) | ||
| HMT-612 | Pseudomonas fluorescens | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Low) | ||
| HMT-344 | Pseudomonas luteola | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | Opportunistic Pathogen (Abundance: Scarce) | |
| HMT-740 | Pseudomonas oleovorans | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-834 | Pseudomonas otitidis | Named | Cultivated | Skin/Ear (Abundance: Scarce) | ||
| HMT-032 | Pseudomonas sp. HMT-032 | Phylotype | Uncultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-538 | Pseudoramibacter alactolyticus | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-357 | Pyramidobacter piscolens | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-854 | Ralstonia pickettii | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-406 | Ralstonia sp. HMT-406 | Phylotype | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-857 | Rhodobacter capsulatus | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-652 | Rhodopseudomonas telluris (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-322 | Riemerella sp. HMT-322 | Phylotype | Uncultivated | Oral (Abundance: High) | ||
| HMT-244 | Roseomonas gilardii | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-245 | Roseomonas mucosa | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-188 | Rothia aeria | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-587 | Rothia dentocariosa | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-147 | Rothia mucilaginosa | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-681 | Rothia mucilaginosa | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-075 | Ruminococcaceae [G1] bacterium HMT-075 | Phylotype | Uncultivated | Oral (Abundance: High) | ||
| HMT-085 | Ruminococcaceae [G2] bacterium HMT-085 | Phylotype | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-366 | Ruminococcaceae [G3] bacterium HMT-366 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-381 | Ruminococcaceae [G3] bacterium HMT-381 | Phylotype | Uncultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-350 | Saccharimonadales [F1 G1] bacterium HMT-350 | Phylotype | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-986 | Saccharimonadales [F2 G1] bacterium HMT-986 | Phylotype | Uncultivated | Taxonomic Reference (Abundance: Scarce) | ||
| HMT-989 | Saccharimonadales [F2 G1] bacterium HMT-989 | Phylotype | Uncultivated | Taxonomic Reference (Abundance: Scarce) | ||
| HMT-355 | Saccharimonadales [F3 G1] bacterium HMT-355 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-954 | Saccharimonadales [F4 G1] bacterium HMT-954 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-391 | Saccharimonadales [F5 G1] bacterium HMT-391 | Unnamed | Cultivated in coculture | Oral (Abundance: No Data) | ||
| HMT-987 | Saccharimonadota [C1 O1 F1 G1] bacterium HMT-987 (DROPPED) | Dropped | Uncultivated | Unassigned | ||
| HMT-988 | Saccharimonas aalborgensis | Named NVP | Cultivated in coculture | Taxonomic Reference (Abundance: Scarce) | ||
| HMT-955 | Saccharimonas sicarius | Unnamed | Cultivated in coculture | Oral (Abundance: Scarce) | ||
| HMT-346 | Saccharimonas sp. HMT-346 | Phylotype | Uncultivated | Oral (Abundance: High) | ||
| HMT-347 | Saccharimonas sp. HMT-347 | Phylotype | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-349 | Saccharimonas sp. HMT-349 | Phylotype | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-394 | Saccharimonas sp. HMT-394 | Unnamed | Cultivated in coculture | Oral (Abundance: No Data) | ||
| HMT-397 | Saccharimonas sp. HMT-397 | Unnamed | Cultivated in coculture | Oral (Abundance: No Data) | ||
| HMT-869 | Saccharimonas sp. HMT-869 | Phylotype | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-856 | Sanguibacter keddieii | Named | Cultivated | Environmental -Non-Human Animal (Abundance: Scarce) | ||
| HMT-642 | Scardovia inopinata | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-195 | Scardovia wiggsiae | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-850 | Schaalia cardiffensis | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-710 | Schaalia dentiphila | Named NVP | Cultivated | Oral (Abundance: Medium) | ||
| HMT-617 | Schaalia georgiae | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-178 | Schaalia hongkongensis | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-181 | Schaalia lingnae | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-671 | Schaalia meyeri | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-701 | Schaalia odontolytica | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-172 | Schaalia sp. HMT-172 | Unnamed | Cultivated | Oral (Abundance: High) | ||
| HMT-180 | Schaalia sp. HMT-180 | Unnamed | Cultivated | Oral (Abundance: Medium) | ||
| HMT-240 | Schaalia sp. HMT-240 | Unnamed | Cultivated | Oral (Abundance: High) | ||
| HMT-404 | Schaalia sp. HMT-404 | Unnamed | Cultivated | Oral (Abundance: No Data) | ||
| HMT-877 | Schaalia sp. HMT-877 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-026 | Schlegelella aquatica | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-024 | Schlegelella thermodepolymerans | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-553 | Segatella baroniae | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-560 | Segatella buccae | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-289 | Segatella maculosa | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-311 | Segatella oris | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-288 | Segatella oulorum | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-307 | Segatella salivae | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-300 | Segatella sp. HMT-300 | Phylotype | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-305 | Segatella sp. HMT-305 | Phylotype | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-309 | Segatella sp. HMT-309 | Phylotype | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-443 | Segatella sp. HMT-443 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-261 | Segetibacter aerophilus | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-129 | Selenomonadaceae [G1] bacterium HMT-129 | Unnamed | Cultivated but Lost | Oral (Abundance: Low) | ||
| HMT-132 | Selenomonadaceae [G1] bacterium HMT-132 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-135 | Selenomonadaceae [G1] bacterium HMT-135 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-145 | Selenomonadaceae [G1] bacterium HMT-145 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-148 | Selenomonadaceae [G1] bacterium HMT-148 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-150 | Selenomonadaceae [G1] bacterium HMT-150 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-155 | Selenomonadaceae [G1] bacterium HMT-155 | Unnamed | Cultivated but Lost | Oral (Abundance: Low) | ||
| HMT-483 | Selenomonadaceae [G1] bacterium HMT-483 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-918 | Selenomonadaceae [G1] bacterium HMT-918 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-124 | Selenomonas artemidis | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-139 | Selenomonas dianae | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-136 | Selenomonas felix | Named NVP | Cultivated | Oral (Abundance: Medium) | ||
| HMT-125 | Selenomonas flueggei | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-639 | Selenomonas infelix | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-130 | Selenomonas noxia | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-126 | Selenomonas sp. HMT-126 | Unnamed | Cultivated | Oral (Abundance: Medium) | ||
| HMT-133 | Selenomonas sp. HMT-133 | Unnamed | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-134 | Selenomonas sp. HMT-134 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-137 | Selenomonas sp. HMT-137 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-140 | Selenomonas sp. HMT-140 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-143 | Selenomonas sp. HMT-143 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-146 | Selenomonas sp. HMT-146 | Unnamed | Cultivated but Lost | Oral (Abundance: Low) | ||
| HMT-149 | Selenomonas sp. HMT-149 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-388 | Selenomonas sp. HMT-388 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-442 | Selenomonas sp. HMT-442 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-478 | Selenomonas sp. HMT-478 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-479 | Selenomonas sp. HMT-479 | Unnamed | Cultivated but Lost | Oral (Abundance: Low) | ||
| HMT-481 | Selenomonas sp. HMT-481 | Unnamed | Cultivated but Lost | Oral (Abundance: Low) | ||
| HMT-501 | Selenomonas sp. HMT-501 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-892 | Selenomonas sp. HMT-892 | Unnamed | Cultivated | Oral (Abundance: Low) | ||
| HMT-919 | Selenomonas sp. HMT-919 | Unnamed | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-920 | Selenomonas sp. HMT-920 | Unnamed | Cultivated | Oral (Abundance: Low) | ||
| HMT-936 | Selenomonas sp. HMT-936 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-937 | Selenomonas sp. HMT-937 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-151 | Selenomonas sputigena | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-138 | Selenomonas timonae | Unnamed | Cultivated | Oral (Abundance: Low) | ||
| HMT-115 | Serratia marcescens | Named | Cultivated | Oral (Abundance: Scarce) | Environmental -Soil/Water (Abundance: Scarce) | |
| HMT-095 | Shuttleworthia satelles | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-683 | Simonsiella muelleri | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-602 | Slackia exigua | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-837 | Sneathia sanguinegens | Named | Cultivated | Vaginal (Abundance: Medium) | ||
| HMT-844 | Sneathia vaginalis | Named | Cultivated | Vaginal (Abundance: Medium) | ||
| HMT-678 | Solobacterium moorei | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-003 | Sphingomonas glacialis | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-004 | Sphingomonas sp. HMT-004 | Phylotype | Uncultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-550 | Staphylococcus aureus | Named | Cultivated | Nasal (Abundance: High) | ||
| HMT-331 | Staphylococcus auricularis | Named | Cultivated | Skin/Ear (Abundance: Scarce) | ||
| HMT-116 | Staphylococcus capitis | Named | Cultivated | Skin (Abundance: High) | Nasal (Abundance: Medium) | |
| HMT-567 | Staphylococcus caprae | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | Opportunistic Pathogen (Abundance: Scarce) | |
| HMT-117 | Staphylococcus cohnii | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-601 | Staphylococcus epidermidis | Named | Cultivated | Nasal (Abundance: High) | Skin (Abundance: High) | |
| HMT-120 | Staphylococcus haemolyticus | Named | Cultivated | Nasal (Abundance: Low) | Skin (Abundance: Low) | |
| HMT-127 | Staphylococcus hominis | Named | Cultivated | Nasal (Abundance: Low) | Skin (Abundance: Low) | |
| HMT-128 | Staphylococcus lugdunensis | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-141 | Staphylococcus pasteuri | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-142 | Staphylococcus pettenkoferi | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-789 | Staphylococcus saccharolyticus | Named | Cultivated | Skin (Abundance: Medium) | ||
| HMT-233 | Staphylococcus schleiferi | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-076 | Staphylococcus warneri | Named | Cultivated | Skin (Abundance: Scarce) | ||
| HMT-663 | Stenotrophomonas maltophilia | Named | Cultivated | Opportunistic Pathogen (Abundance: Scarce) | ||
| HMT-037 | Stenotrophomonas nitritireducens | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-419 | Stomatobaculum longum | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-373 | Stomatobaculum sp. HMT-373 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-910 | Stomatobaculum sp. HMT-910 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-537 | Streptococcus agalactiae | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-543 | Streptococcus anginosus | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-073 | Streptococcus australis | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-576 | Streptococcus constellatus | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-578 | Streptococcus cristatus | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-886 | Streptococcus cristatus (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-594 | Streptococcus downei | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-622 | Streptococcus gordonii | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-061 | Streptococcus infantis | Unnamed | Cultivated | Oral (Abundance: Medium) | ||
| HMT-431 | Streptococcus infantis | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-444 | Streptococcus infantis | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-638 | Streptococcus infantis | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-644 | Streptococcus intermedius | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-456 | Streptococcus koreensis | Named NVP | Cultivated | Oral (Abundance: No Data) | ||
| HMT-948 | Streptococcus lactarius | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-677 | Streptococcus mitis | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-686 | Streptococcus mutans | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-071 | Streptococcus oralis | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-398 | Streptococcus oralis | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-707 | Streptococcus oralis | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-411 | Streptococcus parasanguinis | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-721 | Streptococcus parasanguinis (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-728 | Streptococcus peroris | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-734 | Streptococcus pneumoniae | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-425 | Streptococcus pseudopneumoniae | Named | Cultivated | Oral (Abundance: No Data) | ||
| HMT-745 | Streptococcus pyogenes | Named | Cultivated | Pathogen (Abundance: Scarce) | ||
| HMT-415 | Streptococcus rubneri | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-755 | Streptococcus salivarius | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-758 | Streptococcus sanguinis | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-767 | Streptococcus sinensis | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-768 | Streptococcus sobrinus | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-055 | Streptococcus sp. HMT-055 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-056 | Streptococcus sp. HMT-056 | Unnamed | Cultivated | Oral (Abundance: Low) | ||
| HMT-057 | Streptococcus sp. HMT-057 | Unnamed | Cultivated but Lost | Oral (Abundance: Medium) | ||
| HMT-058 | Streptococcus sp. HMT-058 | Unnamed | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-064 | Streptococcus sp. HMT-064 | Unnamed | Cultivated | Oral (Abundance: Low) | ||
| HMT-065 | Streptococcus sp. HMT-065 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-066 | Streptococcus sp. HMT-066 | Unnamed | Cultivated | Oral (Abundance: Medium) | ||
| HMT-067 | Streptococcus sp. HMT-067 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-068 | Streptococcus sp. HMT-068 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-069 | Streptococcus sp. HMT-069 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-070 | Streptococcus sp. HMT-070 | Unnamed | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-074 | Streptococcus sp. HMT-074 | Unnamed | Cultivated but Lost | Oral (Abundance: Medium) | ||
| HMT-423 | Streptococcus sp. HMT-423 | Unnamed | Cultivated but Lost | Oral (Abundance: No Data) | ||
| HMT-486 | Streptococcus sp. HMT-486 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-487 | Streptococcus sp. HMT-487 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-152 | Streptococcus thermophilus | Named | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Low) | ||
| HMT-021 | Streptococcus vestibularis | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-477 | Stutzerimonas stutzeri | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-435 | Syntrophomonadaceae [G1] bacterium HMT-435 | Phylotype | Uncultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-613 | Tannerella forsythia | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-286 | Tannerella serpentiformis | Unnamed | Cultivated | Oral (Abundance: Medium) | ||
| HMT-808 | Tannerella sp. HMT-808 | Phylotype | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-916 | Tannerella sp. HMT-916 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-826 | Terrahaemophilus aromaticivorans (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-541 | Treponema amylovorum | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-584 | Treponema denticola | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-653 | Treponema lecithinolyticum | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-664 | Treponema maltophilum | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-667 | Treponema medium | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-805 | Treponema pallidum | Named | Cultivated | Pathogen (Abundance: Scarce) | ||
| HMT-724 | Treponema parvum | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-725 | Treponema pectinovorum | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-743 | Treponema putidum | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-438 | Treponema socranskii | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-440 | Treponema socranskii | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-769 | Treponema socranskii | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-226 | Treponema sp. HMT-226 | Phylotype | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-227 | Treponema sp. HMT-227 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-228 | Treponema sp. HMT-228 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-230 | Treponema sp. HMT-230 | Phylotype | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-231 | Treponema sp. HMT-231 | Phylotype | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-232 | Treponema sp. HMT-232 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-234 | Treponema sp. HMT-234 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-235 | Treponema sp. HMT-235 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-236 | Treponema sp. HMT-236 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-237 | Treponema sp. HMT-237 | Phylotype | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-238 | Treponema sp. HMT-238 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-239 | Treponema sp. HMT-239 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-242 | Treponema sp. HMT-242 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-246 | Treponema sp. HMT-246 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-247 | Treponema sp. HMT-247 | Phylotype | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-249 | Treponema sp. HMT-249 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-250 | Treponema sp. HMT-250 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-251 | Treponema sp. HMT-251 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-252 | Treponema sp. HMT-252 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-253 | Treponema sp. HMT-253 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-254 | Treponema sp. HMT-254 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-255 | Treponema sp. HMT-255 (DROPPED) | Dropped | Cultivated | Unassigned | ||
| HMT-256 | Treponema sp. HMT-256 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-257 | Treponema sp. HMT-257 | Unnamed | Cultivated but Lost | Oral (Abundance: Medium) | ||
| HMT-258 | Treponema sp. HMT-258 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-260 | Treponema sp. HMT-260 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-262 | Treponema sp. HMT-262 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-263 | Treponema sp. HMT-263 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-264 | Treponema sp. HMT-264 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-265 | Treponema sp. HMT-265 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-268 | Treponema sp. HMT-268 | Unnamed | Cultivated but Lost | Oral (Abundance: Low) | ||
| HMT-269 | Treponema sp. HMT-269 | Unnamed | Cultivated but Lost | Oral (Abundance: Scarce) | ||
| HMT-270 | Treponema sp. HMT-270 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-271 | Treponema sp. HMT-271 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-490 | Treponema sp. HMT-490 | Unnamed | Cultivated but Lost | Oral (Abundance: Low) | ||
| HMT-508 | Treponema sp. HMT-508 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-517 | Treponema sp. HMT-517 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-518 | Treponema sp. HMT-518 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-927 | Treponema sp. HMT-927 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-951 | Treponema sp. HMT-951 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-029 | Treponema vincentii | Named | Cultivated | Oral (Abundance: Low) | ||
| HMT-432 | Treponema vincentii | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-799 | Ureaplasma parvum | Named | Cultivated | Vaginal (Abundance: Medium) | ||
| HMT-375 | Urinicoccus timonensis | Unnamed | Cultivated | Human-Associated, Primary Site Uncertain (Abundance: Scarce) | ||
| HMT-717 | Variovorax paradoxus | Named | Cultivated | Environmental -Soil/Water (Abundance: Scarce) | ||
| HMT-524 | Veillonella atypica | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-887 | Veillonella denticariosi | Named | Cultivated | Oral (Abundance: Scarce) | ||
| HMT-160 | Veillonella dispar | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-156 | Veillonella nakazawae | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-161 | Veillonella parvula | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-158 | Veillonella rogosae | Named | Cultivated | Oral (Abundance: High) | ||
| HMT-157 | Veillonella sp. HMT-157 | Unnamed | Cultivated | Oral (Abundance: No Data) | ||
| HMT-779 | Veillonella sp. HMT-779 | Unnamed | Cultivated | Oral (Abundance: Medium) | ||
| HMT-780 | Veillonella sp. HMT-780 | Unnamed | Cultivated | Oral (Abundance: High) | ||
| HMT-917 | Veillonella sp. HMT-917 | Phylotype | Uncultivated | Oral (Abundance: Low) | ||
| HMT-421 | Veillonella tobetsuensis | Named | Cultivated | Oral (Abundance: Medium) | ||
| HMT-998 | Victivallis lenta | Named | Cultivated | Taxonomic Reference (Abundance: Scarce) | ||
| HMT-900 | Weeksellaceae [G1] bacterium HMT-900 | Phylotype | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-907 | Weeksellaceae [G1] bacterium HMT-907 | Phylotype | Uncultivated | Oral (Abundance: Scarce) | ||
| HMT-931 | Weeksellaceae [G1] bacterium HMT-931 | Phylotype | Uncultivated | Oral (Abundance: Medium) | ||
| HMT-827 | Yersinia pestis | Named | Cultivated | Pathogen (Abundance: Scarce) |