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Taxonomy: V4.0   |  16S rRNA RefSeq: V16.0   |  Genomic RefSeq: V11.0
Ecology (Abundance) Pages
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Most abundant taxa for each oral sub-habitat.
The following abundance pages show available data with bar charts for the ranks in each taxon name (from domain to species) in the HOMD database. Listed on this page are taxonomic names from domain through genus for the taxa in HOMD. Each name in the table below is a link to a page showing abundance data from the three sources:
Eren (2014) , NIH HMP Data (not published yet) and Dewhirst (not published yet).

DomainPhylumClassOrderFamilyGenus
Archaea Euryarchaeota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter
Bacteria
Absconditicoccaceae
Acetobacteraceae
Actinomycetaceae
Aerococcaceae
Akkermansiaceae
Alcaligenaceae
Anaerolineaceae
Anaerovoracaceae
Atopobiaceae
Bacillaceae
Bacteroidaceae
Bartonellaceae
Bifidobacteriaceae
Brevibacteriaceae
Brucellaceae
Burkholderiaceae
Caldilineaceae
Campylobacteraceae
Cardiobacteriaceae
Carnobacteriaceae
Caryophanaceae
Caulobacteraceae
Chitinophagaceae
Chlamydiaceae
Chlorobiaceae
Clostridiales [F1]
Clostridiales [F3]
Comamonadaceae
Coprobacillaceae
Coriobacteriaceae
Corynebacteriaceae
Dermabacteraceae
Dermatophilaceae
Desulfobulbaceae
Desulfomicrobiaceae
Desulfovibrionaceae
Dethiosulfovibrionaceae
Dietziaceae
Eggerthellaceae
Enterobacteriaceae
Enterococcaceae
Eremiobacterota [C1 O1 F1]
Erysipelotrichaceae
Erythrobacteraceae
Eubacteriaceae
Filifactoraceae
Flavobacteriaceae
Fusobacteriaceae
Gemellaceae
Helicobacteraceae
Ignavibacteriaceae
Intrasporangiaceae
Jonesiaceae
Kytococcaceae
Lachnospiraceae
Lactobacillaceae
Lawsonellaceae
Leptotrichiaceae
Listeriaceae
Lysobacteraceae
Melioribacteraceae
Metamycoplasmataceae
Microbacteriaceae
Micrococcaceae
Microcoleaceae
Mollicutes [O1 F1]
Mollicutes [O2 F2]
Moraxellaceae
Morganellaceae
Mycobacteriaceae
Mycoplasmoidaceae
Nanogingivalaceae
Nanoperiomorbaceae
Nanosynbacteraceae
Nanosyncoccaceae
Neisseriaceae
Nitrobacteraceae
Odoribacteraceae
Oscillospiraceae
Paenibacillaceae
Paludibacteraceae
Paracoccaceae
Parvisynbacteraceae
Pasteurellaceae
Patescibacteria [C1 O1 F1]
Peptococcaceae
Peptoniphilaceae
Peptostreptococcaceae
Phyllobacteriaceae
Porphyromonadaceae
Prevotellaceae
Promicromonosporaceae
Propionibacteriaceae
Pseudobdellovibrionaceae
Pseudomonadaceae
Rhizobiaceae
Rhodocyclaceae
Rikenellaceae
Ruminococcaceae
Saccharimonadaceae
Saccharimonadales [F1]
Saccharimonadales [F2]
Saccharimonadales [F3]
Saccharimonadales [F4]
Selenomonadaceae
Sphingobacteriaceae
Sphingomonadaceae
Staphylococcaceae
Streptococcaceae
Synergistaceae
Syntrophomonadaceae
Tannerellaceae
Treponemataceae
Veillonellaceae
Victivallaceae
Weeksellaceae
Yersiniaceae
Abiotrophia
Absconditicoccaceae [G1]
Absconditicoccaceae [G2]
Achromobacter
Acidovorax
Acinetobacter
Actinomyces
Aeriscardovia
Aerococcus
Afipia
Agathobacter
Aggregatibacter
Agrobacterium
Akkermansia
Alistipes
Alkalihalobacillus
Alloiococcus
Alloprevotella
Alloscardovia
Anaerococcus
Anaeroglobus
Anaerolinea
Anaerolineae [G1]
Anaerosphaera
Anaerovoracaceae [G1]
Anaerovoracaceae [G2]
Anaerovoracaceae [G3]
Anaerovoracaceae [G4]
Anaerovoracaceae [G5]
Anaerovoracaceae [G8]
Anoxybacillus
Aquamicrobium
Arachnia
Arcanobacterium
Arsenicicoccus
Arthrospira
Atopobium
Bacillus
Bacteroides
Bartonella
Bdellovibrio
Bifidobacterium
Bordetella
Bradyrhizobium
Brevibacterium
Brevundimonas
Brochothrix
Brooklawnia
Brucella
Bulleidia
Burkholderia
Butyrivibrio
Caldilinea
Campylobacter
Capnocytophaga
Cardiobacterium
Catonella
Caulobacter
Cellulosimicrobium
Centipeda
Chlamydia
Chlorobium
Chryseobacterium
Cloacibacterium
Clostridiales [F1 G1]
Clostridiales [F1 G2]
Clostridiales [F3 G1]
Comamonas
Corynebacterium
Cronobacter
Cryptobacterium
Cupriavidus
Cutibacterium
Delftia
Dermabacter
Desulfobulbus
Desulfomicrobium
Desulfovibrio
Dialister
Dietzia
Dolosigranulum
Eggerthella
Eggerthia
Eikenella
Enhydrobacter
Enterobacter
Enterococcus
Eremiobacterota [C1 O1 F1 G1]
Erysipelothrix
Erysipelotrichaceae [G1]
Erythrobacter
Escherichia
Eubacterium
Faecalibacterium
Fannyhessea
Fastidiosipila
Filifactor
Finegoldia
Flavitalea
Fretibacterium
Fusobacterium
Gallibacter
Gardnerella
Gemella
Granulicatella
Haematobacter
Haemophilus
Hallella
Helicobacter
Hominimerdicola
Hornefia
Hoylesella
Ignavibacterium
Janibacter
Jeotgalicoccus
Johnsonella
Jonquetella
Kingella
Klebsiella
Kluyvera
Kocuria
Kytococcus
Lachnoanaerobaculum
Lachnocurva
Lachnospiraceae [G10]
Lachnospiraceae [G2]
Lachnospiraceae [G3]
Lachnospiraceae [G7]
Lachnospiraceae [G8]
Lacticaseibacillus
Lactiplantibacillus
Lactobacillus
Lactococcus
Lancefieldella
Lautropia
Lawsonella
Lentilactobacillus
Leptothrix
Leptotrichia
Levilactobacillus
Ligilactobacillus
Limosilactobacillus
Listeria
Lysinibacillus
Megasphaera
Melioribacter
Mesorhizobium
Metamycoplasma
Micavibrio
Microbacterium
Micrococcus
Mitsuokella
Mobiluncus
Mogibacterium
Mollicutes [O1 F1 G1]
Mollicutes [O2 F2 G2]
Moraxella
Moryella
Mycobacterium
Mycolicibacterium
Mycoplasmoides
Mycoplasmopsis
Nanogingivalis
Nanoperiomorbus
Nanosynbacter
Nanosyncoccus
Neisseria
Neisseriaceae [G1]
Novosphingobium
Odoribacter
Odoribacteraceae [G3]
Odoribacteraceae [G4]
Odoribacteraceae [G5]
Odoribacteraceae [G7]
Olegusella
Olsenella
Oribacterium
Oryzomicrobium
Ottowia
Paenacidovorax
Paenibacillus
Paludibacteraceae [G1]
Parabacteroides
Paracoccus
Parascardovia
Parvimonas
Parvisynbacter
Patescibacteria [C1 O1 F1 G1]
Patescibacteria [C1 O1 F1 G2]
Pedobacter
Peptidiphaga
Peptoanaerobacter
Peptococcus
Peptoniphilaceae [G1]
Peptoniphilaceae [G2]
Peptoniphilaceae [G3]
Peptoniphilus
Peptostreptococcus
Phocaeicola
Porphyromonas
Prevotella
Propionibacteriaceae [G1]
Propionibacterium
Proteus
Pseudoleptotrichia
Pseudomonas
Pseudoramibacter
Pyramidobacter
Ralstonia
Rhodobacter
Riemerella
Roseomonas
Rothia
Ruminococcaceae [G1]
Ruminococcaceae [G2]
Ruminococcaceae [G3]
Saccharimonadales [F1 G1]
Saccharimonadales [F2 G1]
Saccharimonadales [F3 G1]
Saccharimonadales [F4 G1]
Saccharimonadales [F5 G1]
Saccharimonas
Sanguibacter
Scardovia
Schaalia
Schlegelella
Segatella
Segetibacter
Selenomonadaceae [G1]
Selenomonas
Serratia
Shuttleworthia
Simonsiella
Slackia
Sneathia
Solobacterium
Sphingomonas
Staphylococcus
Stenotrophomonas
Stomatobaculum
Streptococcus
Stutzerimonas
Syntrophomonadaceae [G1]
Tannerella
Treponema
Ureaplasma
Urinicoccus
Variovorax
Veillonella
Victivallis
Weeksellaceae [G1]
Yersinia